PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007123.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 274aa    MW: 31076.5 Da    PI: 5.1098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007123.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.5e-26106166259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+WrKYGqK++ ++++prsYYrCt++   gC+++++v+rs++dp++ eitY geH+++
  Aco007123.1 106 DDGYTWRKYGQKVIFSAKHPRSYYRCTYKydkGCQATRQVQRSEDDPTLYEITYIGEHTCR 166
                  8***************************99999*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2696166IPR003657WRKY domain
SuperFamilySSF1182901.11E-24100166IPR003657WRKY domain
PROSITE profilePS5081122.068100163IPR003657WRKY domain
SMARTSM007745.5E-37105167IPR003657WRKY domain
PfamPF031061.2E-25106166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEETAIDELT RGRESTIRLE QFLRKTLPPE AQGPNTTFAG LIGEILGSFD KALSNLDSEG  60
RRSGALLDRR SENFGGKKTI RSGRKGGYRR RAHPYSCTQQ RKKTTDDGYT WRKYGQKVIF  120
SAKHPRSYYR CTYKYDKGCQ ATRQVQRSED DPTLYEITYI GEHTCRDLPD SSIIINFDGT  180
AATNNSNQPQ KAEYFDEEVI SKLVMTGFSS SENLVLQDLM VSMPKVEIAS CGSESTSDLQ  240
SPCGSFDMEF DEQLFDFDDI YSQFRAYPDF ETM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-121061691877Probable WRKY transcription factor 4
2lex_A1e-121061691877Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6633171e-128KM663317.1 Ananas bracteatus clone 47652 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922757.16e-65PREDICTED: probable WRKY transcription factor 70
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-31WRKY DNA-binding protein 70